Table 2 SNPs and Indels detection
From: Performance comparison of four types of target enrichment baits for exome DNA sequencing
| Sequencing QC Metric | IDT | Agilent | Twist | Dynegen |
|---|---|---|---|---|
| Sample ID | S074_5 | 9 | A298 | A1 |
| Percent Selection | 48 | 55 | 32 | 63 |
| Percent Duplication | 15.09 | 12.93 | 10.74 | 14.7 |
| Estimated Library Size (millions) | 5794.4 | 5863.3 | 3796.4 | 7050.5 |
| Count SNP on Target | 40,729 | 41,748 | 22,964 | 54,340 |
| Count INDEL on Target | 5154 | 4852 | 806 | 6603 |
| SNP concordance to dbsnp138 on Target | 99.00% | 97.00% | 98.00% | 97.00% |
| SNP concordance to NA12878 on Target | 90.00% | 85.00% | 88.00% | 87.00% |
| Sensitivity 2 HET on Target referring dbsnp138 | 99.00% | 95.00% | 97.00% | 96.00% |
| Percent A < --->G Count on Target | 36.04 | 35.23 | 37.15 | 35.19 |
| Percent C < --->T Count on Target | 35.81 | 35.91 | 37.40 | 35.27 |
| Percent INS/INDEL on Target | 52.20 | 50.90 | 50.00 | 51.37 |
| Percent INDEL (length = 1) on Target | 58.67 | 61.29 | 28.78 | 61.00 |
| Percent INDEL (length < =10) on Target | 93.69 | 94.87 | 84.24 | 94.99 |